LOC_Os08g07010

Expression Profile

RGAP LOCUS ID LOC_Os08g07010
RAP-DB ID Os08g0167000
Function ABC-2 type transporter domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 2.886

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Nuclear
score 87.26
confidence value 0.29
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsABCG18
Function assigned as per literature OsABCG18 controls the shootward transport of cytokinins and grain yield in rice.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice root cells and tobacco leaf epidermis cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31504730
Reference of localization https://academic.oup.com/jxb/article/70/21/6277/5554342
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score 0.15
Protein Sequence >LOC_Os08g07010.1 protein
MPPQELHGDDHGRHHHHQTPAGSGGGGAGDGHHRDFSSPPSTTSSSSSSSSSSSTNSPTATAASSSSTNTSGAAIVHPTTSSHPSVASGHHSAANSYPLV
LKFEEVVYKVKIGKPAAGWCARMSSAIGGGGEGRRKKGAAAVAKEKTIISGMSGVVRPGEMLAMLGPSGSGKTTLLTALGGRHGGGGGGGRGMLSGKITY
NGQPFSGAVKRRTGFVTQHDVLYPHLTVAETLWYTALLRLPRALGAGEKRAQAEEVMLELGLGKVAHSMIGGVRGVRGLSGGERKRVSIGLEMLVDPSLL
LLDEPTSGLDSTTAARIVGTLRRMAAGGGRTVVVTIHQPSSRLYHMFDKVLLLSSDGCPIYYGLAADALSYFASVGFASPLSLNPADLMLDLANGIAPQI
SGGGGDGDVGGGAAAAAANGGGSEAELKEVRGKLAAAYERHIAPAVKLDICAREGGGGGGQGAAAAAAVAGRRRRGGGKAAAEQWTNGWWAQFTVLLRRG
VKERRYESFNKLRIFQVLSVASLAGLLWWRTPAAHLQDRTALIFFFSVFWGFFPLYNAVFTFPLERPMLVKERSSGMYRLSSYFAARTAADLPMELALPT
AFVVILYWMGGLDPRPGPFLLSLLVVLYSVLVAQSLGLAIGAVLMDVKQGTTLASVITMVFLIAGGYYVQHIPPFVGWLRWLNYSFYCYRLLIGIQFGDG
AAHYDCGGGGARCLVADFPAIKAVGLNNHWVDVCVMALLLVGYRVIAYLALDRLKPR

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Molecular Function
GO Term transporter activity
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No