LOC_Os08g06630

Expression Profile

RGAP LOCUS ID LOC_Os08g06630
RAP-DB ID Os08g0163400
Function RNA polymerase sigma factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Mitochondrial
score 2.386

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.02
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category Orphans

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIG1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.131
NLS score -0.47
Protein Sequence >LOC_Os08g06630.1 protein
MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPP
PPPPPTPSPASRAAHAHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRRGRTKNGAAHFAVSPEL
IQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG
VELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATE
AVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIA
MEKLKHAARRKNLEALLEDY

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
7
GO Category Molecular Function
GO Term molecular_function
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES