LOC_Os08g06380

Expression Profile

RGAP LOCUS ID LOC_Os08g06380
RAP-DB ID Os08g0160500
Function CSLF6 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 11.5

2) CELLO Prediction
localization PlasmaMembrane
score 2.903

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 4
confidence value 0.06
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CslF6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os08g06380.1 protein
MAPAVAGGGGRRNNEGVNGNAAAPACVCGFPVCACAGAAAVASAASSADMDIVAAGQIGAVNDESWVAVDLSDSDDAPAAGDVQGALDDRPVFRTEKIKG
VLLHPYRVLIFVRLIAFTLFVIWRIEHKNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPI
LSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEEFVNDRRRVRKEYDDFKARING
LEHDIKQRSDSYNAAAGVKDGEPRATWMADGSQWEGTWIEQSENHRKGDHAGIVLVLLNHPSHARQLGPPASADNPLDFSGVDVRLPMLVYVAREKRPGC
NHQKKAGAMNALTRASAVLSNSPFILNLDCDHYINNSQALRAGICFMLGRDSDTVAFVQFPQRFEGVDPTDLYANHNRIFFDGTLRALDGLQGPIYVGTG
CLFRRITLYGFEPPRINVGGPCFPRLGGMFAKNRYQKPGFEMTKPGAKPVAPPPAATVAKGKHGFLPMPKKAYGKSDAFADTIPRASHPSPYAAEAAVAA
DEAAIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLFGSTFLH
PLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVTKV
VFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVV
LVWWAFTFVITAVLYINIPHIHGPGRHGAASPSHGHHSAHGTKKYDFTYAWP

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Molecular Function
GO Term transferase activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term carbohydrate metabolic process
9
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
10
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants YES