| RGAP LOCUS ID |
LOC_Os08g06280 |
| RAP-DB ID |
Os08g0159500 |
| Function |
LSD1 zinc finger domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Extracellular |
| score |
3.481 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.06 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.78 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
LSD |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsLSD1 |
| Function assigned as per literature |
OsLSD1 plays a negative role in regulating plant PCD, whereas it plays a positive role in callus differentiation. |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
tobacco Bright Yellow-2 (BY-2) suspension cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
15915636 |
| Reference of localization |
https://apsjournals.apsnet.org/doi/pdf/10.1094/MPMI-18-0375 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.07 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g06280.1 protein
MCIAEPIFCCIKSPETSCCKLKRFLSCRERKGDFSCLTAARICEASTSDAVVQAAGTAMPVPLAPYPTPPVPFTPPNGAQSQLVCSGCRNLLMYPAGATS
VCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSFQASPGTDQKPS
S |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cell death |
|
| Presence of Splice variants |
YES |
