LOC_Os08g06140

Expression Profile

RGAP LOCUS ID LOC_Os08g06140
RAP-DB ID Os08g0157900
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.594

3) NUCPRED Prediction
localization Non Nuclear
score 0.78

4) Y-Loc Prediction
localization Nuclear
score 94.24
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNTL2
Function assigned as per literature OsNTL2 gene may play a role in later stages of leaf development
Subcellular localization as per literature Plasma membrane and nucleus
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 19766710
Reference of localization https://www.sciencedirect.com/science/article/pii/S0888754309002122?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.097
NLS score 0.15
Protein Sequence >LOC_Os08g06140.1 protein
MTVMELKKLPLGFRFHPTDEELVRHYLKGKITGQIRSEADVIPEIDVCKCEPWDLPDKSLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDR
VIRSKGDKKKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRTTEPEFESGEQGGYVLYRLFRKQEEKIERPSPDEVDRSGYSPTPSRSTPDNMEPIEDGN
TPLNRESPESALHESPIDLPALTEAQAAPITRWLADRTDNATTNEVNISHMPHHGLDGGAKQASPSAGAFPQLIGSQQNIHDNNELATVSAPMLPHEDFN
NFPLGAIGNFDGNMNPRDPVEEFLNQTIADPDEHSSTTSKAQYDSDTGIIPTEFENHGVMQGEFMDDLSGLENLDFWPDDRNPQLSALYEDTPLLPYDST
DQDVLSMDSGAESLQDLFNSMDDSNARNNVWGNEPFLQGTGFPMSWPLQPNSAFPNQGTANRRLMLQLSESLSPDFDVSMTRDECEDEEPGIVVTSKYVN
EAPEESTAEKDMPSDGDDAEPTGITILRRRHAPTASSFSDGDDAESTGITILRQHQAPNASLLSDGDDAESTGITILRRRQAPTASSASSFTQQGAAVQR
VRLQSNLDAAPCSSVDGSSSCIINEGESERTMEKPEIEENAGSTLAEGGTCHEDDQKEHDASAANAKSVLRLRKTAEGSDKENKQEEEEGVLASHVRAPG
NKRGFPSYIIWLVLSVALVLLISLGIYGWV

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES