LOC_Os08g05910

Expression Profile

RGAP LOCUS ID LOC_Os08g05910
RAP-DB ID Os08g0155400
Function peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 10

2) CELLO Prediction
localization PlasmaMembrane
score 4.471

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Cytoplasm
score 85
confidence value 0.44
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNRT1.1A
Function assigned as per literature involved in regulating N utilization and flowering
Subcellular localization as per literature tonoplast
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29475937
Reference of localization http://www.plantcell.org/content/early/2018/02/23/tpc.17.00809
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.09
NLS score -0.16
Protein Sequence >LOC_Os08g05910.1 protein
MVGMLPETNAQAAAEEVLGDAWDYRGRPAARSRTGRWGAAAMILVAELNERLTTLGIAVNLVTYLTATMHAGNAEAANVVTNFMGTSFMLCLLGGFVADS
FLGRYLTIAIFTAVQASGVTILTISTAAPGLRPAACAAGSAACERATGAQMGVLYLALYLTALGTGGLKSSVSGFGSDQFDESDSGEKSQMMRFFNWFFF
FISLGSLLAVTVLVYVQDNLGRPWGYGACAAAIAAGLVVFLAGTRRYRFKKLVGSPLTQIAAVVVAAWRKRRLELPSDPAMLYDIDVGKLAAAEVELAAS
SKKSKLKQRLPHTKQFRFLDHAAINDAPDGEQSKWTLATLTDVEEVKTVARMLPIWATTIMFWTVYAQMTTFSVSQATTMDRHIGASFQIPAGSLTVFFV
GSILLTVPIYDRLVVPVARRATGNPHGLTPLQRIGVGLVLSIVAMVCAALTEVRRLRVARDARVGGGEAVPMTVFWLIPQFLFVGAGEAFTYIGQLDFFL
RECPKGMKTMSTGLFLSTLSLGFFVSSALVAAVHKLTGDRHPWLADDLNKGQLHKFYWLLAGVCLANLLVYLVAARWYKYKAGRAAAAGDGGVEMADAEP
CLH

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Molecular Function
GO Term transporter activity
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term protein binding
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term biological_process
8
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES