LOC_Os08g05520

Expression Profile

RGAP LOCUS ID

LOC_Os08g05520

RAP-DB ID

Os08g0151300

Function

myb-like DNA-binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.638

3) NUCPRED Prediction

localization

Non Nuclear

score

0.44

4) Y-Loc Prediction

localization

Nuclear

score

100

confidence value

0.99

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

MYB

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsMYB103L|CEF1

Function assigned as per literature

OsMYB103L influences leaf rolling and mechanical strength in rice

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

Rice protoplasts and Onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

24906444

Reference of localization

https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-14-158

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.072

NLS score

-0.22

Protein Sequence

>LOC_Os08g05520.1 protein
MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTAEEEKLIISLHAIVGNRWAHIASHLPGRT
DNEIKNYWNSWIKKKIRKPAAAAAAATTTSPNNPPPCSTATSDHHHLPPPAFGGADHHLQLDAIINQNLISSLPPKLATGDDSPPAVPGLPHHCPLFMFD
TTTTGAGGAISPPPPSSLIPTHLHHHHHPFIASFTAAMAADTPSYLPPLVDGMAAMGAAMDCSLEDGQTAAAMAATNGYYQHHQKHQQLEIELEEEEQRQ
LGHHHHQHHHEHEHENHQWDEEEAQHLLMWDQEVLTSSNLEAMQSGAHSLLFMGPNDHD

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Biological Process
GO Term	cellular process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants