LOC_Os08g04780

Expression Profile

RGAP LOCUS ID LOC_Os08g04780
RAP-DB ID Os08g0143400
Function amine oxidase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 7

2) CELLO Prediction
localization Cytoplasmic
score 1.355

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 51.52
confidence value 0.11
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category SWI/SNF-SWI3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Hd18
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.123
NLS score 0.27
Protein Sequence >LOC_Os08g04780.1 protein
MSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRLRRLSADERQRETETEALIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHIL
ASWRADPRVPLPRSRVQETVAASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQRLAASVLVVGAGLAGLAAARQLLRFGLRVLVLEGRARPGGR
VYTTHLGGDQAAVELGGSVITGIHTNPLGVLARQLGIPLHKVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERLRR
FYKVAKSVEEREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMA
LCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDP
AVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKILHASE
SRLNSDYKKYALQKSIRLINNVLDDLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLEKPLLLPSKKRKVKGNQKDQDPVAEKIDQEVFYLYATVSQE
QATELLECDNDKSRIAVLCKDLGVKLMGYDSTYDVCSHLISSISRAQKARKRLQGPKSLKTGL

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term protein modification process
4
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants No