LOC_Os08g04440

Expression Profile

RGAP LOCUS ID LOC_Os08g04440
RAP-DB ID Os08g0139000
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 5

2) CELLO Prediction
localization Chloroplast
score 1.815

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.57
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDEG10
Function assigned as per literature TCM5 is essential for chloroplast development under high temperatures
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Nicotiana tabacum leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27000876
Reference of localization https://thericejournal.springeropen.com/articles/10.1186/s12284-016-0086-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.121
NLS score -0.47
Protein Sequence >LOC_Os08g04440.1 protein
MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGK
FLDGWVIFAEYARPRTPPQQPEMNSQPQQSWGPPSSSWGAQ

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Biological Process
GO Term biological_process
4
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES