LOC_Os08g04390

Expression Profile

RGAP LOCUS ID LOC_Os08g04390
RAP-DB ID Os08g0138500
Function basic helix-loop-helix DND-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 4.124

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPRI1|OsbHLH115
Function assigned as per literature Regulator of Iron homeostasis
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28751317
Reference of localization http://www.plantphysiol.org/content/early/2017/07/27/pp.17.00794
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score -0.47
Protein Sequence >LOC_Os08g04390.2 protein
MSGTPADGGGGGGGGGGGSGDDWFLDCGILEDLPAAACGAFPWDASPSCSNPSVEVSSYVNTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMND
RFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMPHPTLMPAPYP
QAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSKDSEACPPVA

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No