LOC_Os08g04270

Expression Profile

RGAP LOCUS ID LOC_Os08g04270
RAP-DB ID Os08g0137100
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Extracellular
score 1.154

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.13
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFIE2
Function assigned as per literature Affect Grain yield and plant height
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 27764161
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0164748
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.04
Protein Sequence >LOC_Os08g04270.1 protein
MAKLGPGQGLGCEAAVGLLAPSRKREYKACNKLTEGKRPLYAIGFNFLDFHYYEVFATVGGNRVTTYSCLKDGNFAILQAYIDEDKDESFYTLSWACDLD
GTPLLVAAGSNGIIRVINCATEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
NTVKIWSMKEFWPYVEQSFTWTDLPSKFPTKYVQFPVLVAVVHSNYVDCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIK
FSCDFHFNQLAIGNREGKVFVWEVQSSPPVLTARLTNPQCKSAIRQTAVSFDGSTILACSEDGSIWRWDEVDHPKA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term reproduction
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
8
GO Category Biological Process
GO Term response to stress
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
11
GO Category Cellular comBiological Processonent
GO Term nucleus
12
GO Category Biological Process
GO Term flower development
13
GO Category Molecular Function
GO Term protein binding
14
GO Category Molecular Function
GO Term nucleotide binding
15
GO Category Biological Process
GO Term post-embryonic development
16
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES