LOC_Os08g03350

Expression Profile

RGAP LOCUS ID LOC_Os08g03350
RAP-DB ID Os08g0127100
Function amino acid transporter, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 13

2) CELLO Prediction
localization PlasmaMembrane
score 4.913

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 95
confidence value 0.86
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHT|OsLHT1
Function assigned as per literature OsHT is a gene that encodes for a histidine transporter from rice
Subcellular localization as per literature plasma membrane
Cells used for localization experiment onion epidermal cells.
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID not available
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1744-7909.2005.00016.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score -0.22
Protein Sequence >LOC_Os08g03350.1 protein
MGTQVADNYPPAKDGRSAQEKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTLWQMVEMHEMVPGKRFDR
YHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKKFHDVLCEGHGCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIA
WGASVDKGKVADVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDNIL
ITLSRPKWLIALANMMVVIHVIGSYQIYAMPVFDMIETVLVKKLRFPPGLTLRLIARTLYVAFTMFIAITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLA
IYKPRRFSLSWFTNWICIILGVMLMILSPIGGLRQIIIDAKTYKFYS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term cellular process
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
6
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No