LOC_Os08g02490

Expression Profile

RGAP LOCUS ID LOC_Os08g02490
RAP-DB ID Os08g0118000
Function AT hook motif domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization E.R.
score 4.5

2) CELLO Prediction
localization Nuclear
score 2.132

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Nuclear
score 66.77
confidence value 0.19
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAHL1|AHL1
Function assigned as per literature AHL1 is a novel plant matrix attachment region (MAR) binding protein involved in positioning chromatin fibers in the nucleus by an AT-hook motif and PPC (plants and prokaryotes conserved)
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco BY-2 cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 15604740
Reference of localization https://link.springer.com/article/10.1007/s11103-004-3249-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.075
NLS score 0.03
Protein Sequence >LOC_Os08g02490.1 protein
MEAKSGEASVAPVAVATEATAATVSFQPQAAVAEQGSSSGGVLVPPPPMAAGGGGVVVAAAPVAGVVKVGKKRGRPRKYGPDGSLIRPLNATPISASVPM
AASAVGPYTPASAVGAAMKRGRGRPLDFASTAKLHHHHQHQHHHQQQQFGFHFDSIGEMVACSAGANFTPHIITVAPGEDVTMKVISFSQQGPRAICILS
ANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGSFMPTENSGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQIVVGSFLPSYQMEQKNKKPRVEA
APALAQTPPAVPISSTDTHSSEQGQHSSVAPRTTNIVTSAYNPDQSWASPAQSIPDSARTPSGDVKVTASGA

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Cellular comBiological Processonent
GO Term nucleolus
4
GO Category Cellular comBiological Processonent
GO Term mitochondrion
5
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No