LOC_Os08g02380

Expression Profile

RGAP LOCUS ID LOC_Os08g02380
RAP-DB ID Os08g0117000
Function kinesin motor domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9.5

2) CELLO Prediction
localization Nuclear
score 1.895

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Cytoplasm
score 75
confidence value 0.33
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PSS1
Function assigned as per literature essential for male meiotic chromosomal dynamics, male gametogenesis, and anther dehiscence in rice
Subcellular localization as per literature predominantly in the cytoplasm
Cells used for localization experiment rice protoplast cells and Arabidopsis protoplast cell
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21282525
Reference of localization http://www.plantcell.org/content/23/1/111
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.47
Protein Sequence >LOC_Os08g02380.1 protein
MSNVTVCVRFRPLSHKERKTNGDKVCFKRLDSESFVFKDEREEDVIFSFDRVFYEDAEQSDVYNFLAVPIVADAISGINGTIITYGQTGAGKTYSMEGPS
ILHCNKQKTGLVQRVVDELFQSLQSSESMAMWSVKLSMVEIYLEKVRDLLDLSKDNLQIKESKTQGIYISGATEVSIQNSSDALECLSEGIANRAVGETQ
MNLASSRSHCLYIFSVQQGSTSDERVRGGKIILVDLAGSEKVEKTGAEGRVLDEAKTINKSLSVLGNVVNALTTGKPNHVPYRDSKLTRILQDALGGNSR
AALLCCCSPSASNAPESLSTVRFGTRTKLIKTTPKSISPEVDSIKKPIPDSHGQNDLRDRILNKLRLSLKEEDVDLLEELFVQEGIIFDPNYSVADIDSA
CQDAASQEVSLLTQAVEELKETVEELTDENERLRGELELAQEAAAAAAAARADGALLGFVPAVAISSLLRPFGFVPD

GO Analysis
1
GO Category Biological Process
GO Term cellular process
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Molecular Function
GO Term motor activity
Presence of Splice variants YES