LOC_Os08g02250

Expression Profile

RGAP LOCUS ID LOC_Os08g02250
RAP-DB ID Os08g0115200
Function IQ calmodulin-binding motif domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.413

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 53.66
confidence value 0.19
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIQD14
Function assigned as per literature OsIQD14 acts as a key factor in regulating MT rearrangements in rice hull cells and hence the grain shape
Subcellular localization as per literature Microtubule (MT) and nuclear localization. The C‐terminal region of OsIQD14 fused to GFP showed MT localization only, while the N‐terminal region of OsIQD14 fused to GFP showed nuclear localization only
Cells used for localization experiment rice root cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 31622529
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13279
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.158
NLS score -0.47
Protein Sequence >LOC_Os08g02250.1 protein
MGKKAGTTSSWLTAVKRAFRSPSKDDSPNKAARLRDDTDDDKGKRERRRWLFRKSSSPSPAPPTPPPPQQQQQQSRAAAVTEEQRHAIALAVATAATAEA
AVATAQAAAEVVRLTRPSSSFVREHYAAIVVQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQANMTLRCMQALVRVQARVRDQRMRLSQDSISLSAA
AASAAPCGSSKSSYSVDTSTFWDSKYTHDFAAADRRSIERSRDGSSFAAGDDWDDRPRTIEEIQAMLQTRKDAALKRERALSYAFSHQIWRNPAPSVEEM
DVDGQPRWAERWMASRASFDTSRSTVRASAAAAPGRASTDHRDQVKTLEIDTARPFSYSTPRRHGNASYHASSSPMHRAHHHSPVTPSPSKARPPIQVRS
ASPRVERGGGGGGSYTPSLHSHRHHASSGGAAAVPNYMAATESAKARVRSQSAPRQRPATPERDRMSFGGGGGGGGAKKRLSFPVPIDPYGAYAQSLRSP
SFKSAAGRFSSEQRSNVSSSCAESLGGDVVSPSSTTDLRRWLR

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No