LOC_Os08g01920

Expression Profile

RGAP LOCUS ID LOC_Os08g01920
RAP-DB ID Os08g0110700
Function SGR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 2.806

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Cytoplasm
score 54
confidence value 0.27
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) FSE1
Function assigned as per literature FSE1 is a phospholipase-like protein that controls the synthesis of galactolipids in rice endosperm and provide a novel connection between lipid metabolism and starch synthesis in rice grains during endosperm development
Subcellular localization as per literature cytosol and intracellular membranes
Cells used for localization experiment protoplasts and root tip cells of fse1 complemented lines
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29717019
Reference of localization http://www.plantphysiol.org/content/177/2/698.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.29
Protein Sequence >LOC_Os08g01920.1 protein
MESPAARGALGDDASGASTSQAAPGAVDGGASPDSLRNTPSNIARLEDAIEHCAARRKYLARTKSPSDGEDVRWYFCKLPLADKALSASVPRTEIVGKGD
YFRFSMRDSLALEASFLEREEALLAYWWREYAECSEGPKGSLVAADASDSKSLYKVEEERVGVPVKGGLYEVDLMRRHCFPVYWNGENRRVLRGHWFARK
GGLDWIPLREDVSEQLELAYNCQVWHRRKFQPSGLFAARVDLQGSTPDLHALFTGEDDTWEAWLVFDTGPKLGGNTIKLRRGFSSSGSAKPTQDELRQQK
EEEMDDYCSQVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQRVLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVH
DVLYYMSPIYCQHIIDSVSNQLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEGHIAKSPDTVTAHESVMKEQD
TSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALENSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHA
DVPDKDTLISSLKEEVERLKARLAQLEQHNDLVTESSAESHQGKSATHAVNLSSGKNRIGQGSTSESYTPHIRYTKLNFKVDTFYAVGSPLGVFLSLRNV
RIGIGRGQDYWQNENIVEEMPCCRQMFNIFHPFDPVAYRIEPLVCEDYISKRPVIVPYHRGGKRIHVGVQEFTEDIAARSQAVARQFKSLKVKAVAALLS
LSRNDTDEDVDSNNEKEKSYGYMMMERLTGSPDGRIDHVLQEKTFQHPYLSALGSHTNYWRDHDTALFILKHLYRDIPEEPPTDDPERMPIRLFYVRDPI
AEETPLTFSDNSLVKEFSRKVRTYSRKSENDSSCESS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term vacuole
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term tropism
5
GO Category Biological Process
GO Term response to external stimulus
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Cellular comBiological Processonent
GO Term cellular_component
8
GO Category Molecular Function
GO Term hydrolase activity
9
GO Category Biological Process
GO Term cellular component organization
10
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No