LOC_Os08g01900

Expression Profile

RGAP LOCUS ID LOC_Os08g01900
RAP-DB ID Os08g0110500
Function armadillo/beta-catenin repeat family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Nuclear
score 2.756

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Cytoplasm
score 41
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPUB15
Function assigned as per literature OsPUB15 functions to reduce cellular oxidative stress during seedling establishment
Subcellular localization as per literature Cytosol
Cells used for localization experiment Rice mesophyll protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 21223385
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-313X.2010.04416.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.04
Protein Sequence >LOC_Os08g01900.1 protein
MENFSPRTLLNSILRITVLTSDGSTARPKPIQKYCQNVCDISSIVSPLIEDLCESPEEQLNEVLRELGTAINRASGLIGNWQQTTSKIYFIWQIESVISD
IQGCSLQLCQLVNSLLPSLTGRACTCIEKLQDINYENMFDLVKESSLELVETDTTSPENLSRLSSSLSLSTNLEFYMEAVSLENLRARAMRSENREEMDL
ADKMIPLVNYMHDHLLRETQLLSINGVPIPADFCCPLSLELMSDPVIVASGQTYERVYIKLWLDEGFTICPKTRQRLGHSNLIPNYTVKALIANWCESHN
IRLPDPMKSLKLNFPLAASALQDSSTTGSSPLHPTVAAKGNIPGSPEADLYMRSLNRASPPHSVVHQNSHAHVNRAGHEASIKQSSENANGSASDVSRLS
LAGSETRESSLEERNAGSIGQTSEQSIEEAFQASNLDRDSHDHVGSSSVNGSLPNSGQLDAECDNGPSERTNYSSDASGEVTDGPSASSAPQREHLIPSR
LADVRSRGQFVRRPSERGFPRIISSSSMDTRSDLSAIENQVRKLVDDLRSDSVDVQRSATSDIRLLAKHNMENRIIIANCGAINLLVGLLHSPDSKTQEH
AVTALLNLSINDNNKIAIANADAVDPLIHVLETGNPEAKENSAATLFSLSVIEENKVRIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSILHENKARI
VQADAVKYLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQARGIPALVEVVELGSARGKENAAAALLQLCTNSSRFCSIVLQEGAVPPLVALSQSGTP
RAREKAQALLSYFRSQRHGNSARR

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Molecular Function
GO Term binding
3
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No