LOC_Os08g01420

Expression Profile

RGAP LOCUS ID LOC_Os08g01420
RAP-DB ID Os08g0105000
Function PHD-finger domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Nuclear
score 2.117

3) NUCPRED Prediction
localization Non Nuclear
score 0.75

4) Y-Loc Prediction
localization Nuclear
score 99.93
confidence value 0.9
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Ehd3
Function assigned as per literature Ehd3 acts as a promoter in the unique genetic pathway responsible for photoperiodic flowering in rice
Subcellular localization as per literature nucleus
Cells used for localization experiment Rice callus
NUCLEAR or Not Nuclear NUCLEAR
PMID 21284756
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2011.04517.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 4
Number of Bipartite 1
Basic residues % 0.112
NLS score 2.05
Protein Sequence >LOC_Os08g01420.1 protein
MGSQNRPPPPRKRQPPPPEDHLVTYKRRRSKETQPLPLMANGANSKKDAKAQHWISWRDTLHGFLQSPAISQGGGIQTCIRHALQHNPCLLTNGVVVHTE
FKGNPAHSQGEEAKVQHPNGAAGGKVVSADAAIQDAAAAASSEANKAMCNNALFDILVSQKFALLCHLLLGTFHVNKPGDVIDLEKIDAKMRNGDYAHNP
ALFDDDIQQMWEKFEQVGQEMTGLASNLSTISRVSYQKQASGFSEAEVAEHRIEEISLPGAVHVVTKESTTTVQLAPCDSSHSTIPKRTVPPGRDLCPCD
GCGTKVDVEEGLICDECDTMYHFACVKLLNPDIKQVPAIWHCSTCSFKKKELAADTTNNVAHDCLHGGNCVLCDQLELVKTEEEDPKLPIKIELAEEREG
SSVSSMGEDNEPDLSTTALSNLCKHCGTCEDDDKRFMVCGHPYCVYKFYHIRCLKTSQLAIEQQKKLGCWYCPSCLCRGCFQDKDDDQIVMCDGCDEGYH
IYCMRPARNTIPKGKWYCTFCKIRRAAEGMHKYEDSVLKIHGNSKHACNVNQSKDSEGDGTEK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term binding
Presence of Splice variants No