LOC_Os08g01170

Expression Profile

RGAP LOCUS ID LOC_Os08g01170
RAP-DB ID Os08g0102000
Function acetyltransferase, GNAT family, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Chloroplast
score 2.282

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.68
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category GNAT

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSNAT2
Function assigned as per literature OsSNAT2 has role melatonin synthesis
Subcellular localization as per literature Cytoplasm and chloroplasts
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27121038
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jpi.12339
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.13
NLS score -0.47
Protein Sequence >LOC_Os08g01170.1 protein
MQMQAARPRVGVRPRGGIRPFPLPTLSFNNNSNRSACACACAVSVSDSELAARGFAVRRSSTGLDVGALNEVFARVGFPRRQEERLRRALEHSEVVWLED
SASSSAGRPVAFARAAGDGVFNAVVWDVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEPRVVGFYRLLGFAMDPDAIRGMAFYRSRQQIQNTSS

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term transferase activity
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No