LOC_Os08g01090

Expression Profile

RGAP LOCUS ID LOC_Os08g01090
RAP-DB ID Os08g0101000
Function B3 DNA binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 13

2) CELLO Prediction
localization Nuclear
score 2.681

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category ABI3VP1/B3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) IDEF1
Function assigned as per literature IDEF1 regulates the response to and tolerance of iron deficiency in plants
Subcellular localization as per literature Predominantly in the nucleus but also in the cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18025467
Reference of localization http://www.pnas.org/content/104/48/19150.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os08g01090.1 protein
MGQMDGGDGGGGGHPYHYQALLAAVHQQTVPFPNPFPAPSSGAEPPHPHNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTPTPTPTPRGFADWSASTSAF
TSLAAHSSTAPSNAVHYSFSPCYAFWTHYMLNKNAYPTSFPAPHDDHLRLANNNHPRDAPGPASSYGVESFTSPSMAPNICTHMPPIEGPISAKEDKKPE
ILPRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRATKLLNSGEYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVT
WKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIHQQTTNP

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Cellular comBiological Processonent
GO Term cytosol
11
GO Category Biological Process
GO Term embryo development
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES