LOC_Os07g49460

Expression Profile

RGAP LOCUS ID LOC_Os07g49460
RAP-DB ID Os07g0695100
Function response regulator receiver domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 4.3

3) NUCPRED Prediction
localization Nuclear
score 0.86

4) Y-Loc Prediction
localization Nuclear
score 99.98
confidence value 0.89
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Pseudo ARR-B

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Ghd7.1|Hd2|OsPRR37|DTH7
Function assigned as per literature role in grain yield and adaptation in rice under different photoperiod conditions.
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice leaf protoplasts.
NUCLEAR or Not Nuclear NUCLEAR
PMID 25378698
Reference of localization https://www.pnas.org/content/111/46/16337.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.12
NLS score 0.02
Protein Sequence >LOC_Os07g49460.1 protein
MMGTAHHNQTAGSALGVGVGDANDAVPGAGGGGYSDPDGGPISGVQRPPQVCWERFIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTY
LEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQK
CAKSKSGDESNNNNGSNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQAMSPDQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQ
KETNDDFKGKDLEIGSPRNLNTAYQSSPNERSIKPTDRRNEYPLQNNSKEAAMENLEESSVRAADLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDKNR
DNIMPSLELSLKRSRSTGDGANAIQEEQRNVLRRSDLSAFTRYHTPVASNQGGTGFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDM
GSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHPAQHWTSPANTTGKEKTDEVANNAAKRAQPGEVQSNLVQHPRPILHYVHFDVSRENGGSGAPQCGS
SNVFDPPVEGHAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGK
KVRYQSRKRLAEQRPRVRGQFVRQAVQDQQQQGGGREAAADR

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biological_process
6
GO Category Molecular Function
GO Term DNA binding
7
GO Category Cellular comBiological Processonent
GO Term nucleus
8
GO Category Cellular comBiological Processonent
GO Term mitochondrion
9
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants YES