LOC_Os07g49310

Expression Profile

RGAP LOCUS ID LOC_Os07g49310
RAP-DB ID Os07g0693800
Function omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 1.004

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.93
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFAD8
Function assigned as per literature
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22378946
Reference of localization https://academic.oup.com/jxb/article/63/8/3279/733629
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.092
NLS score -0.04
Protein Sequence >LOC_Os07g49310.1 protein
MARLLLSGVAPLPLLPCRRRAIAFALPLGNVRLRLRVAAPTSRVATVEEDDNENNAPPPPCEDFDPGAAPPFGLADIRAAIPKHCWVKDPWRSMGYVLRD
VVVVFALAAAAARLHSCLAWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSRLNSVMGHILHSSILVPYHGWRISHRTHHQNHGHVDKDESWHPLPERLYR
SLNRATRMLRFSIPFPMLAYPFYLWSRSPGKSGSHFHPSSDLFQPNERNDVLTSTACWVAMAALLAGLTFLMGPLLMLNLYFVPYWIFVMWLDFVTYLHH
HGHNDKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKGVMGKYYREPDKSGPFPLHLFGALSRSLKRDHYVSD
TGDVVYYQTDPAN

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term lipid metabolic process
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants YES