LOC_Os07g48200

Expression Profile

RGAP LOCUS ID LOC_Os07g48200
RAP-DB ID Os07g0679700
Function B3 DNA binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6.5

2) CELLO Prediction
localization Nuclear
score 3.276

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 51.75
confidence value 0.12
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category ABI3VP1/B3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVAL2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.16
Protein Sequence >LOC_Os07g48200.1 protein
MAGMAAAAAALVAAKRCMNAACGAPAPSPAGGEWRKGWPLRSGGFAVLCDKCGLAYEQLVFCDIFHQKESGWRDCSFCGKRLHCGCIASKNSFDLLDSGG
VQCVTCIKNSAVQSVPSPVVPKLFSSQNNQRLFGKSDDLLSGRPLETSSLMVDARNDDLTIIAKNNLPFMVKNVEAGQSSNILRQKELENGARQIKWELP
TLSIGDMGRIPFLTRSQSALESRRDENKDPTTESTTSESLSEACLNMSLGIASNGNKLEATSTVERPMLSPTTGFPEGRELTTALSPFQHAQRARHFLTR
PPRVGEGAVFDPTKDMLPHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPL
TIQDAKGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSILGDTLFSSTNENLAIVSG
YSGFLQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDEGSLQFLKRGRNIGSKSRRLSMDAEEAWELKLYWDEVQELLRPAPTAKPTVVMIED
YEIEEYDEPPVFAKRSIFTIRSTGEQDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDSKSCSCSAPEELTPKELHIVLQQYEDMRRRRNSFGFKQNIP
EMDAVSLDAFATAAVYGDVGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSEREEAEASKKIAWMNR
DEPEGSSLSRSPQTVDTTRDGDVTMFDKVDINKGHIDLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYMKQNGLTSLAGEQGSSSTCTGAATVPQ
PALVESEERTSNNDGGRVATAEQPESMAVDEAGDNQPDKAAGDSAAALA

GO Analysis
1
GO Category Biological Process
GO Term post-embryonic development
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Biological Process
GO Term reproduction
Presence of Splice variants YES