| RGAP LOCUS ID |
LOC_Os07g47240 |
| RAP-DB ID |
Os07g0668600 |
| Function |
expressed protein |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.497 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.46 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
93 |
| confidence value |
0.73 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
Yes |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsGZF1 |
| Function assigned as per literature |
OsGZF1 controls accumulation of glutelins during grain development |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice seedling protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
24282069 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs11103-013-0158-5 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.121 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os07g47240.1 protein
MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPR
EAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQL
DLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| Presence of Splice variants |
No |
