LOC_Os07g46450

Expression Profile

RGAP LOCUS ID LOC_Os07g46450
RAP-DB ID Os07g0658300
Function pleckstrin homology domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Nuclear
score 2.759

3) NUCPRED Prediction
localization Nuclear
score 0.9

4) Y-Loc Prediction
localization Nuclear
score 98.18
confidence value 0.36
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPIN6
Function assigned as per literature SPIN6 negatively regulates programmed cell death and innate immunity in rice
Subcellular localization as per literature Plasma membrane when interacted with OsRac1
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25658451
Reference of localization http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1004629#sec001
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.22
Protein Sequence >LOC_Os07g46450.1 protein
MAAATAPVAGAAERQQQQQQQQRGGAASASGNAVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNTLPQRGGEVNVTLGGIDLNNSGSVVVRE
DKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEEALAQAPNAALVMGHNGIFRNDTTDPYEGAVPNWREKRPIKSLVVGRPILLALEDIDGSPSFLE
KALRFLERHGIKVEGILRQAADVEEVDKRMQEYEQGRTEFAQDEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAFRLESKESRINSMRAAISETFPEP
NRRLLQRILRMMHTVASHTAENRMTASAVAACMAPLLLRPLLAGECEMEDDLDMNGDSSAQLIAAANAANSAQGIVTTLLEEYEGIFYDEHLRCSLSPDS
QIEDSGSEESTDDETVDIKDSGFHDAENDADQELDDSERILSGKLSETSACTAGDLYDYKVADDDSDGEPSTEDKALETKVDVNDAQHSHLAENVSVNVQ
RSPNEKDPPNMVSSQDSPLSMGDILSSLDAGISLPGPGPEYSVDRQSIKSNGTQMHVKRSNFWGRNNGRKSQQSELADSSGEEELAIQRLEITKNDLQIR
IAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSAHISSSRSMDSKTKAELEEIALAEADVARLKQKVAELHLQLN
QQRQHQYGSLADANDRYQHLPNHLPQNFVQSGFDMNLAFCNQEKKQRNEGPAGASHWRSIKQHVLPHGSSRPFSRKHSMDASSSDSREASTSMPADGNSM
SVNIPKATEGVEYGRQAPVASSTLVELTTRLDFFKERRSQLMEQLHSLDLGNGSANHGFPYKSSSPWNSPR

GO Analysis
1
GO Category Molecular Function
GO Term enzyme regulator activity
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term plastid
4
GO Category Cellular comBiological Processonent
GO Term thylakoid
5
GO Category Biological Process
GO Term signal transduction
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Molecular Function
GO Term lipid binding
Presence of Splice variants YES