LOC_Os07g44690

Expression Profile

RGAP LOCUS ID

LOC_Os07g44690

RAP-DB ID

Os07g0640900

Function

HSF-type DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.269

3) NUCPRED Prediction

localization

Non Nuclear

score

0.56

4) Y-Loc Prediction

localization

Nuclear

score

99.89

confidence value

0.93

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

HSF

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsHsfB4b

Function assigned as per literature

OsHsfB4b is involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice

Subcellular localization as per literature

Nucleus when interacted with OsClpB-cyt

Cells used for localization experiment

Onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

22147560

Reference of localization

https://link.springer.com/article/10.1007%2Fs12192-011-0303-5#MOESM5

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.097

NLS score

0.52

Protein Sequence

>LOC_Os07g44690.1 protein
MAFLVERCGEMVVSMEMGPHGGGGAAAGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVA
DRWEFANEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRN
SLLLSELAHMKKLYNDIIYFLQNHVAPVTTTTTTPSSTAMAAAQHHLPAAASCRLMELDSPDHSPPPPPPKTPATDGGDTVKLFGVSLHGRKKRAHRDDD
DGVHDQGSEV

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	cellular process

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants