LOC_Os07g43980
| RGAP LOCUS ID | LOC_Os07g43980 |
| RAP-DB ID | Os07g0633500 |
| Function | DEAD-box ATP-dependent RNA helicase, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 7 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.562 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.59 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 71.99 |
| confidence value | 0.36 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsRH36 |
| Function assigned as per literature | OsRH36 is required for rRNA biogenesis and megagametogenesis in rice |
| Subcellular localization as per literature | Nucleus with a strong signal in the nucleolus |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 20607362 |
| Reference of localization | https://link.springer.com/article/10.1007%2Fs11103-010-9659-7 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 5 |
| Number of PAT7 | 2 |
| Number of Bipartite | 0 |
| Basic residues % | 0.138 |
| NLS score | 1.47 |
| Protein Sequence | >LOC_Os07g43980.1 protein MEVDGEARPFLLFSKPKSSKKKPKQEAEPQVHTQPEEPPNPSPSPAIEPDLRDSDEAPAAAVTEHAGDDAAAAAVPSTFAELGLSQWLVDVCDSLGMRVP TAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVV ATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHV PPDAKELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPR YPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQERKRKHD E |
GO Analysis |
|
| Presence of Splice variants | No |