| RGAP LOCUS ID |
LOC_Os07g43530 |
| RAP-DB ID |
Os07g0628500 |
| Function |
helix-loop-helix DNA-binding domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
4.553 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.55 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.31 |
| confidence value |
0.9 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
bHLH |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsbHLH1|OsbHLH062 |
| Function assigned as per literature |
Acts as a transcription factor in a cold signal-transduction pathway |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
12920519 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs00122-003-1378-x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.128 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os07g43530.2 protein
MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLK
NESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFPE
SATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPVFPGRQDQQCSSGTSGTNEEDRIGRS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cell communication |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
