LOC_Os07g43420

Expression Profile

RGAP LOCUS ID LOC_Os07g43420
RAP-DB ID Os07g0627300
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.024

3) NUCPRED Prediction
localization Nuclear
score 0.8

4) Y-Loc Prediction
localization Nuclear
score 99.92
confidence value 0.93
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFLP
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.47
Protein Sequence >LOC_Os07g43420.1 protein
MATGPDLTPPAAAASAEAPSASAAKKDRHIVSWSTEEDDVLRTQIALHGTDNWTIIAAQFKDKTARQCRRRWYNYLNSECKKGGWSREEDLLLCEAQKVL
GNKWTEIAKVVSGRTDNAVKNRFSTLCKRRAKDDELFKENGSLCSSTSSKRALVQTGCLTSGASGSAPPIKQMRPCNSDFKENMTPNMRLVGQDKSTQDS
RQPLAIVYQNNQDNMNTMDTQNLVAKTAAKQLFAGEQNCVKHEGNFLNKDDPKIATLLQRADLLCSLATKINTENTSQSMDEAWQQLQHHLDKKDDNDMS
ESSMSGMASLLEDLDDLIVDPYENEEEEDQDLREQTEQIDVENKQNSSQTSMEVTSQMVPDNKMEDCPNDKSTEDNNMEPCPGEDIPTSENLTEAAIEDS
LLQCVEYSSPVHTVIQAKTDAEIAASENLSEVLEHNRLQCIQLASPAQTTTPVEANAETPASEKLREVVKCNNPSCIEFTSPAHTVPTFLPYADDMPTPK
FTASERNFLLSVLELTSPGSRPDTSQQPSCKRALLNSL

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term cell differentiation
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No