LOC_Os07g43390

Expression Profile

RGAP LOCUS ID LOC_Os07g43390
RAP-DB ID Os07g0627000
Function 4-alpha-glucanotransferase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Chloroplast
score 2.676

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.78
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DPE1
Function assigned as per literature DPE1 participates substantially in starch synthesis in rice endosperm by transferringmaltooligosyl groups from amylose and amylopectin to amylopectin
Subcellular localization as per literature Chloroplast
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26471894
Reference of localization http://www.plantphysiol.org/content/plantphysiol/169/4/2496.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.16
Protein Sequence >LOC_Os07g43390.1 protein
MATLSLPLPHLTQAIPARARPRPRPLRGIPARLLSCRAAMAVAPDKEEAAAVALDKAVKVAVAAPDRAAVAAVGVGEELPEGYDQMMPAVEEARRRRAGV
LLHPTSLRGPHGIGDLGDEAVAFLAWLRDAGCTLWQVLPLVPPGRKSGEDGSPYSGQDANCGNTLLISLEELVKDGLLMENELPDPLDMEYVEFDTVANL
KEPLIAKAAERLLLSRGELRTQYDCFKKNPNISGWLEDAALFAAIDRSIDALSWYEWPEPLKNRHLRALEDIYQKQKDFIEIFMAQQFLFQRQWQRIRKY
AKKLGISIMGDMPIYVGYHSADVWANRKSFLLDKNGFPTFVSGVPPDAFSETGQLWNSPLYDWKAMEAGGFEWWIKRINRALDLYDEFRIDHFRGLAGFW
AVPSESKVALVGSWRAGPRNAFFDALFKAVGRINIIAEDLGVITEDVVDLRKSIEAPGMAVLQFAFGGGSDNPHLPHNHEFDQVVYTGTHDNDTVIGWWQ
TLPEEEKQTVFKYLPEANRTEISWALITAALSSVARTSMVTMQDILGLDSSARMNTPATQKGNWRWRMPSSVSFDSLSPEAAKLKELLGLYNRL

GO Analysis
1
GO Category Biological Process
GO Term carbohydrate metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term generation of precursor metabolites and energy
4
GO Category Molecular Function
GO Term transferase activity
5
GO Category Biological Process
GO Term catabolic process
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No