| RGAP LOCUS ID |
LOC_Os07g43010 |
| RAP-DB ID |
Os07g0622900 |
| Function |
expressed protein |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.049 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.97 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
DTM1 |
| Function assigned as per literature |
DTM1 plays important roles in the ER membrane during early tapetum development, functioning after MSP1 and before UDT1, and also in meiocyte development, after MEL1 and before PAIR1. |
| Subcellular localization as per literature |
Endoplasmic reticulum |
| Cells used for localization experiment |
protoplasts from etiolated rice |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
22111585 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2011.04864.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.116 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os07g43010.1 protein
MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQWLTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYG
FGLYKWWMYVSS |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
protein metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| Presence of Splice variants |
No |
