LOC_Os07g42440

Expression Profile

RGAP LOCUS ID LOC_Os07g42440
RAP-DB ID Os07g0616500
Function hydroxyacid oxidase 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Chloroplast
score 1.717

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.27
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GLO4
Function assigned as per literature GLO4 and GLO1 coordinately control GLO isozymes in rice
Subcellular localization as per literature Peroxisome
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22761858
Reference of localization https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0039658
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score -0.47
Protein Sequence >LOC_Os07g42440.1 protein
MEDNLPVNVREYQELAKKALPKMAYDYINGGAEDEHTLRENIAAYTRIILRPRVLVDVSKIDMSTTLLGYTMRSPIIVAPTGGHKLAHPEGEKATARAAA
SCNAIMVLSFSSSCKIEDVASSCNAIRFYQLYVYKNRNVSATLVRRAESCGFKALLLTVDTPMLGRREADIRNKMVFPRSGNLEGLMTTDDHDTTNGSQL
ERFARATLDPSLSWKDIEWLKSITSMPIFLKGIVTAEDARRAVEAGVAGVIVSNHGARQLDYAPATIAALEEVVRAVAGAVPVLVDGGIRRGTDVFKALA
LGARAVMVGRPVFFGLAARGEAGARHVIEMLNGELEVAMALCGCRSVGEITRSHVMTEGDRIRSLL

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
Presence of Splice variants YES