LOC_Os07g42410

Expression Profile

RGAP LOCUS ID LOC_Os07g42410
RAP-DB ID Os07g0616000
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.236

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 93.41
confidence value 0.52
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DEP2|EP2|SRS1
Function assigned as per literature essential for determining panicle outgrowth and elongation
Subcellular localization as per literature  cytoplasm, plasma membrane and nucleus
Cells used for localization experiment onion epidermal cells and N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 20502443
Reference of localization https://www.nature.com/articles/cr201069
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.132
NLS score 0.45
Protein Sequence >LOC_Os07g42410.1 protein
MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRAAEEQAAAQPPPPAIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAE
MSQLEGARKIYAQGVAGGADGAESAAAADITKKELLRAIDVRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGANRLSEACNKFMSLCQRRPDIC
PHYSVSSTSSQWKSFDDGNVRGSSSSDMSLDETQADQGASSNKSIIGGSVSHIHRSNSQNSVDVPPEPSAVQHPKPTIQQSVEKQEKETDALPAPAPAGG
GSRRLSVQDRINMFESKQKEQTSSSGNSAACTSKVVPTKGEHRRVPSGASMDKLVRRWSNVSDMSIDLSNNDSSSLNEKREIGTPVGTPTSANLEVNSKA
RADGDANGLKHAVTSCQKDTSDALPLDSTTADAFSSSTLNTTSPSPLSAIASSSPQKQTAPRVEDDMVITSSIESESSFRKEVGASQGKGDVRMSGQAVS
SVSTRARVKTSPRPTWPENNVTLSSPPLSQEHVQMTDEETIPIVHEVAVKKEQIVQKDNRGSRLRSKEIHAEADVVGRKDRPSRTTGKISDTRTRATSNP
RANFRGSSVRDEAASTEAEVHDVNLQRKSLARKVEDSGRKVAAGSEILPQSDCSIHQGTNLSRQSSSAEQELSLHGGKVKLISDGNAVPLEQTKRPTKGS
QDRHDELQKKANELEKLFAAQKLTSSRRGKSTDVQVENTPRVNEVKPPLVLPERIYTKQIVKESITNEFDANELLKMVDTEGYNNNVPQSIISLEESRGK
FYDQYMQKRDAKLKEDWKLQGEQKEATIKAMRDSLERSNAEMRAKFSRSSSVPDSTYISRCAHKFPPLQSVIKDKDQGIDSFLVEEEMNSDYLSGDGSSR
SADSRKHFSNKVACNQKKSIAPVHRHSSRTVSSGYANRRNLPDNPLAQSVPNFADLRKENTKPSAGLSRAAPRTQPKSFIRSKSIIEESKNISKDQSRKS
QSMRKNLSPGELRDATSMNDVIYNWAPSKISNDQVEGVFAYITHTAGSTKSFLRKGNEAHPAVGIAGFAPPMFANTYQNGDDDDFLDQEEDSPDETKDEE
YESIEENLRESDFPADSDSENPGISHEFGNSDDPGSENGDVSFPSDAPTLGGSKFNAFAGNMHDTPGEVPASWSTRPHLFAYANDNSDGDAFADSPNGSP
SPWNSHTLDQITDADVSRMRKKWGSAQMPFVGPNASQQPRKDVTKGFKKLLKFGRKTRGADGLNDWVSASTASECDDDMEDGRDLAMGSSDDFRKSRMGY
PSAYDGFVDTDVFAEQDQSLRSSIPNPPANFRLREDQLTGSSLKAPRSFFSLSTFRSKGGDARLR

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No