LOC_Os07g42180

Expression Profile

RGAP LOCUS ID LOC_Os07g42180
RAP-DB ID Os07g0613300
Function exportin 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 2.237

3) NUCPRED Prediction
localization Non Nuclear
score 0.37

4) Y-Loc Prediction
localization Cytoplasm
score 87
confidence value 0.41
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PSD
Function assigned as per literature Rice PSD is involved in tRNA export from the nucleus to the cytoplasm
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18850055
Reference of localization https://europepmc.org/article/med/18850055
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.47
Protein Sequence >LOC_Os07g42180.1 protein
MDDLEQAILLASDSPAAAAASPAVRAEALAYCARARDETPPSSLLHLCLYGLASSPHAHVHFWCLQTIHDALLLRRRLALPDDLALLRSSLLSLAVSSNA
ASPPFLRNKLAQLLALLVRFEYPHVYPSYFLDLIPPSPPLPGPTDMFARVLVSLDDDLLSQDYPRNAEEASDAGRVKDAMRAQCVPQIARHWHEAAVSLR
AADPAVAAVALDAARRCISWIDVSLVANDVFVPLLFDIALSPGSVAPLAAAAVGCLSAVAAKRMDARAKVALLRSLMSAQKGFGSPDSGLKMAHLVTAYA
VEALECYRKLGSSDADGAAALEMLEEVLPAVFAAAESGDDDEVDSGSVLEFLSGYVSTMKAPTEKQLGHLGQILEVVRMQMSYDPVYRGHLDVLDKIGKE
EEDLMAEQRKDLIALFRSICRVAPGATQLFIRGLLVTALSSAEVSVEDVEVALTLFYRLGEIVGEEEIRTGAGLIRELVPMLLSARFSCHTHRLVALVYL
DTISRYIKFMQENDQYVPHLLTVFLDERGIHHQNAHVSCHAGYLLMRAIRLLKAKLVPYLDTILQSLQDALVQFTATDWANKDIKFSSSEDGSQIFEAVG
LLIGIEEVSPDKQVQCLTALLNPLCQQIESLVMDAKAQGLEESSPRAIGLQQIIVALTMISKGFNERLVMGSRPTLGVMFKKTLDVVLQVLISFPNVKPL
RSKIISFLHRMVEILGISVLPCIPIALRQLLVDNEAKDMSEFLYLINQIICKFKSSANALLEDVFPAIASHLSVILSHDAFSNGFASNTEEMRELQELEK
RFYAFLLHIATHDLSTVLLTPSCRHYLENIMQLLLITSCSHKEISHRKTCVQTFVNLIKDWCSSSEIEDKLPGFRVFMIEKFATGCCLQSVLDKSFNFRD
GISIALFGEIMMAQKVMYERFGENFVVNFVTKLREAHCPPDLAEQYYQKLQGNDIKAFKSFYESLVMKIRQQQNGSLVFR

GO Analysis
1
GO Category Biological Process
GO Term anatomical structure morphogenesis
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Biological Process
GO Term flower development
4
GO Category Biological Process
GO Term transport
5
GO Category Biological Process
GO Term cellular process
6
GO Category Cellular comBiological Processonent
GO Term cytosol
7
GO Category Molecular Function
GO Term RNA binding
8
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No