LOC_Os07g41200

Expression Profile

RGAP LOCUS ID LOC_Os07g41200
RAP-DB ID Os07g0603300
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.812

3) NUCPRED Prediction
localization Nuclear
score 0.95

4) Y-Loc Prediction
localization Nuclear
score 89.9
confidence value 0.24
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GW7|GL7|SLG7
Function assigned as per literature SLG7 Regulate Grain Shape in Rice
Subcellular localization as per literature plasma membrane
Cells used for localization experiment rice protoplast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26434724
Reference of localization https://www.genetics.org/content/201/4/1591.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.149
NLS score 0.09
Protein Sequence >LOC_Os07g41200.1 protein
MPPARVLGGGGGGGGLGDEAPELERQMGCMAGIFQIFDRRQRLLTARRRRPPPKMLPPGPGHTLPRSSSNVAAQSSSTSKIVLEKTFSKSMTENSSLSIE
SSRASCSSSSCSSFSSLDGNKSIQQELPYINEQLFVQRPLKSSPSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVKTSVKDARRNGQYKDSPRPLL
LSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDDRRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQD
SPGHRRASSVIAKLMGLEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDPRESLPKDESPAMKTKPSPRILTESAPWRQQEKIATSSKAS
QCRDAEVRPRTASLYAYIERRGGGLEFLECNKDFRALRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPIVVMKPARSTEKQPGVSLASV
DPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQSKSDEPASRASSPRPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKP
SQGKNHRDNEVSKSPRSRISMVKEIDISIMDFQKPLASTPSHKGTPSVLASDQKINSLENAPSPISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPD
TPQSKTSSEVSQIKPENFEALIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFLILEQTKPDFASADQTVTKSS
KANTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLRKYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWSFDSESPSTVL
EIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSSTS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No