LOC_Os07g40000

Expression Profile

RGAP LOCUS ID LOC_Os07g40000
RAP-DB ID Os07g0589000
Function DUF260 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Extracellular
score 2.455

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.04
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category LOB/LBD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLBD38
Function assigned as per literature OsLBD38 may function as a novel regulators of heading date and crop yield in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice leaf protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 28342864
Reference of localization https://www.sciencedirect.com/science/article/pii/S0006291X17305752
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.088
NLS score -0.47
Protein Sequence >LOC_Os07g40000.1 protein
MSCNGCRVLRKGCSEGCVLRPCLQWIDGAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQAAVDT
VLRGGGIQPLPDQVDAAAAGGRDVFASTARRAMGGCSTFSTAKRSTTTTTTKNPGTPHDAAAAAPQPEPSCDLGLWLSPGSPPAPGDRRSGGRRADTPSM
NSEGSVTTCGVVGDGEREPELLNLFV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No