LOC_Os07g39700
| RGAP LOCUS ID | LOC_Os07g39700 |
| RAP-DB ID | Os07g0585700 |
| Function | expressed protein |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 9 |
2) CELLO Prediction |
|
| localization | Chloroplast |
| score | 2.5 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.43 |
4) Y-Loc Prediction |
|
| localization | Chloroplast |
| score | 5 |
| confidence value | 0.19 |
| Number Of Software Predicting Nucleus | 1 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | Sdr4 |
| Function assigned as per literature | Regulator of seed dormancy |
| Subcellular localization as per literature | Nucleus |
| Cells used for localization experiment | Protoplast of cultured rice cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 20220098 |
| Reference of localization | https://www.pnas.org/content/107/13/5792.long |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 1 |
| Number of PAT7 | 2 |
| Number of Bipartite | 0 |
| Basic residues % | 0.131 |
| NLS score | 0.44 |
| Protein Sequence | >LOC_Os07g39700.1 protein MAMVQPVDMAVKANEIMARFRPIAPKPVLPAAAAGVTGGGDGAAAVAATNRVLCQLQSRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPLRCAA VATATRARVSVVVVPAPESAGGVSALAPVSPSAGDSTRLSPTVVEVEDEDEERGVVLVERDLLRKLLEPRKLLEPRAVRPVGSTIHVESVHIDVGRTTAA AAAAAPKTAEEVEAELESDSLPAVVSDSSNRVRLVNDAYKRMVGQPECPWLDAVATAASRRISGEVALVVSEPAAAAAALPETCKGFSCSAKIAWERDGK WSSVHAPCDVTRLQCESRDYVFAWRFRAAGDECNTHRRAAGDA |
GO Analysis |
|
| Presence of Splice variants | No |