LOC_Os07g39480

Expression Profile

RGAP LOCUS ID LOC_Os07g39480
RAP-DB ID Os07g0583700
Function WRKY87, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.987

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.96
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category WRKY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsWRKY78
Function assigned as per literature OsWRKY78 regulates stem elongation and seed development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 21547461
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-011-1423-y
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score -0.16
Protein Sequence >LOC_Os07g39480.1 protein
MADSPNPSSGDHPAGVGGSPEKQPPVDRRVAALAAGAAGAGARYKAMSPARLPISREPCLTIPAGFSPSALLESPVLLTNFKVEPSPTTGTLSMAAIMNK
SANPDILPSPRDKTSGSTHEDGGSRDFEFKPHLNSSSQSTASAINDPKKHETSMKNESLNTALSSDDMMIDNIPLCSRESTLAVNISSAPSQLVGMVGLT
DSSPAEVGTSELHQMNSSGNAMQESQPESVAEKSAEDGYNWRKYGQKHVKGSENPRSYYKCTHPNCDVKKLLERSLDGQITEVVYKGRHNHPKPQPNRRL
SAGAVPPIQGEERYDGVATTDDKSSNVLSILGNAVHTAGMIEPVPGSASDDDNDAGGGRPYPGDDAVEDDDLESKRRKMESAAIDAALMGKPNREPRVVV
QTVSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHEVPASRNASHEMSTPPMKPVVHPINSNMQGLGGM
MRACEPRTFPNQYSQAAESDTISLDLGVGISPNHSDATNQLQSSVSDQMQYQMQPMGSVYSNMGLPAMAMPTMAGNAASNIYGSREEKPSEGFTFKATPM
DHSANLCYSTAGNLVMGP

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No