LOC_Os07g39470

Expression Profile

RGAP LOCUS ID LOC_Os07g39470
RAP-DB ID Os07g0583600
Function gibberellin response modulator protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Nuclear
score 1.36

3) NUCPRED Prediction
localization Non Nuclear
score 0.3

4) Y-Loc Prediction
localization Nuclear
score 89.89
confidence value 0.45
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CIGR2
Function assigned as per literature CIGR2 act as transcriptional regulators in the early events of the elicitor-induced defense response in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 12591613
Reference of localization https://www.sciencedirect.com/science/article/pii/S0167478102006267?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os07g39470.1 protein
MADTPTSRMIHPFSNIPSQNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSHSPDAGYESQATPNKYTLDSSEGAGCMRHDSPSSQSFTTRSGSPLS
QEDSHSDSTDGSPVGASCVTEDPNDLKQKLKDLEAVMLGPDSEIVNSLENSVANQLSLEPEKWVRMMGIPRGNLKELLIACARAVEEKNSFAIDMMIPEL
RKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPKSSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQ
ALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLR
MVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPL
SSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAWH

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term signal transducer activity
5
GO Category Biological Process
GO Term post-embryonic development
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No