LOC_Os07g39270

Expression Profile

RGAP LOCUS ID LOC_Os07g39270
RAP-DB ID Os07g0580900
Function polyprenyl synthetase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Chloroplast
score 1.815

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.6
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGGPPS1
Function assigned as per literature OsGGPPS1is recruited by OsGRP from the stroma toward thylakoid membranes, thus providing a mechanism to control GGPP flux toward chlorophyll biosynthesis.
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28607067
Reference of localization http://www.pnas.org/content/pnas/early/2017/06/07/1705689114.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.093
NLS score -0.29
Protein Sequence >LOC_Os07g39270.1 protein
MAAFPPLAASRVRISPLIPAAAMAGTAGAAAASYAQHRRRFCAIVATAAASPVPAAAAAAATGFDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRY
ALLAGGKRVRPALCLAACAVVGGREAWAMPAAAAVEMVHTMSLVHDDLPCMDDDDLRRGKPTCHVVYGEPIAVLTGDALLSLSFHHMARFDSYPPDIDAD
KHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVPLERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKS
SEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHLANYIAYRQN

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES