LOC_Os07g37740

Expression Profile

RGAP LOCUS ID LOC_Os07g37740
RAP-DB ID Os07g0564600
Function secretory carrier-associated membrane protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 3.958

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Nuclear
score 95.06
confidence value 0.89
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSCAMP1
Function assigned as per literature SCAMP1 defines clathrin-coated, trans-golgi–located tubular-vesicular structures as an early endosome
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Tobacco BY-2 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17209124
Reference of localization http://www.plantcell.org/content/19/1/296.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.47
Protein Sequence >LOC_Os07g37740.1 protein
MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFGATVDIPLDSSKDLKNREKELQAREAELNKREKELK
RREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNA
MRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRG
AMRAAF

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No