LOC_Os07g37610

Expression Profile

RGAP LOCUS ID LOC_Os07g37610
RAP-DB ID Os07g0563300
Function B3 DNA binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 4.126

3) NUCPRED Prediction
localization Nuclear
score 0.94

4) Y-Loc Prediction
localization Nuclear
score 99.09
confidence value 0.4
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category ABI3VP1/B3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GD1
Function assigned as per literature regulates seed germination and seedling development by integrating GA and carbohydrate metabolism
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 23581288
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12209
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 5
Number of Bipartite 1
Basic residues % 0.12
NLS score 2.5
Protein Sequence >LOC_Os07g37610.1 protein
MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRG
WRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADRKDNF
VKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTL
YHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHS
VIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEW
VFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTE
SKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRR
TYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKKTKGKVDTDNIDVSDGLDTLANLAILG
EGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPH
QRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT

GO Analysis
1
GO Category Biological Process
GO Term post-embryonic development
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Biological Process
GO Term reproduction
Presence of Splice variants No