| RGAP LOCUS ID |
LOC_Os07g37250 |
| RAP-DB ID |
Os07g0558500 |
| Function |
THYLAKOID FORMATION1, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.225 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.51 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.63 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
NYC4 |
| Function assigned as per literature |
NYC4 may play a role in the degradation of chlorophyll and chlorophyll – protein complexes |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23432654 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12154 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.146 |
| NLS score |
0.09 |
| Protein Sequence |
>LOC_Os07g37250.1 protein
MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTY
QYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVG
LFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
generation of precursor metabolites and energy |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
photosynthesis |
|
| Presence of Splice variants |
No |
