LOC_Os07g36170

Expression Profile

RGAP LOCUS ID LOC_Os07g36170
RAP-DB ID Os07g0545800
Function chitin-inducible gibberellin-responsive protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Nuclear
score 2.271

3) NUCPRED Prediction
localization Non Nuclear
score 0.53

4) Y-Loc Prediction
localization Cytoplasm
score 60
confidence value 0.47
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CIGR1
Function assigned as per literature CIGR1 acts as a transcriptional regulator in the early events of the elicitor-induced defense response in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 12591613
Reference of localization https://www.sciencedirect.com/science/article/pii/S0167478102006267
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.13
Protein Sequence >LOC_Os07g36170.2 protein
MDLHQLLKYRLTGANVVYEIPTENNLQNSPWQANPLKYEFSDSPYTPLSSQFECDNLSALTNTPDNQSSTETISAQPISPLEADSSYRQAGILLQENIQV
GADPLYATSRHNMQHALREIETVLMAPDTDDATTSTKHEFEEIKPAQLVRQRSRTWSHESRQPLPGVGRSQFASGGYPTASYEFRPEKRQRELREDPQII
VKQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPESKELLSYMRILYNICPYFKFGYMAANGAIA
EALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEAL
SVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEG
KDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAWH

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term signal transducer activity
5
GO Category Biological Process
GO Term post-embryonic development
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants YES