LOC_Os07g34110

Expression Profile

RGAP LOCUS ID LOC_Os07g34110
RAP-DB ID Os07g0525100
Function integral membrane protein DUF6 containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7.5

2) CELLO Prediction
localization PlasmaMembrane
score 4.839

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCLIP
Function assigned as per literature OsCLIP is involved in regulation of intracellular auxin transport
Subcellular localization as per literature Tonoplast
Cells used for localization experiment Rice mesophyll cell protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27265035
Reference of localization https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14021
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.077
NLS score -0.47
Protein Sequence >LOC_Os07g34110.1 protein
MSSGGAKAYAAVVLIRIMYSGMHVMSKIALDQGMNPLVFLFYRHTTAALVLIPITFVLERRKAKPVTLKIAGKMFVHALYGVTACGDLFNLGLNYTSAAS
SSALYNVQPVVTFVLAVVFGMESMKLKKFHGNVKAAGILFCIAGVTILAFYEGPMFKSFNHHHLFQQGSSSSTSSSGDTHSKKQWAFGIFLMTLSNILAG
LWTVLQGPLIEDTSKLMNTTLQICCASVQAFVVAVAAERDFSKWKLGWNVELGAVIYSGVVVTALSYYMQMWTIAKRGPVFLAMSMPLTFIFTIIMSSFI
LGDAVSLGSIFAGILLIGGLYNVLWGKNIEEKDEMNKIGASKTGLELELHDSEAQVPDDDAAKV

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term membrane
Presence of Splice variants No