LOC_Os07g31540
| RGAP LOCUS ID | LOC_Os07g31540 | ||||
| RAP-DB ID | Os07g0498800 | ||||
| Function | ubiquitin family protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.99 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.74 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 98.75 | ||||
| confidence value | 0.9 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | CRTintP | ||||
| Function assigned as per literature | CRTintP (CRT-interacting protein) is a ubiquitin carboxyl extension-like nuclear protein showing interaction with rice CRT with a potential regulatory role in response to cold stress | ||||
| Subcellular localization as per literature | Nucleus | ||||
| Cells used for localization experiment | Onion epidermal cells | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 15215503 | ||||
| Reference of localization | https://academic.oup.com/pcp/article/45/6/684/1857353 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.058 | ||||
| NLS score | 0.21 | ||||
| Protein Sequence | >LOC_Os07g31540.1 protein MHSEGMIDDLARSVRDILGSLGLATPGGMTNTTFSVPLTTAPEGANNVNGRTQPGNHAQPGFSILNHQIQVSQLQPAGSIPRNMVIPDSLTTLLEYINRM DQVLQNNGTPSVDTNTQQPPRSDDAYLNQRFPSPEVLVSVIERAQQLLGGSAASALSHLAQRIQRDSGTSDASIRSQIQNESAQLGVAMQHLGAMFLELG RTMMMLRMGPSPADAFVNAGSSVYINSAGPNPIMVQPSFQNTPPFGVSSIPVLGGISGAFGIVDPSRTSAVNTHGTSTTSGSSAGMTTASAGAVNEGRQN VERTQGGNPSATSMHGLPARTVIAAIPARSTAEAPNHVLSVILPVQVRSQVAMPNQSTVSQGSQTAVGGGSQPQASVGGVASIPSIVAQVTAQVANALSA NQQGQVSSSAQNTVDQGSRSVTTNGVDNVDSLVSASTQLQNELSDSNNGRTSLNAQSLVAGAGISPSNTSDPNLASEDSSTENAPNIGSIQQHPEMEGIH ADNVRKPSEESTTANLVGQITTTCTDDISVNRSAENSSQKNIPLDGVSAQSIKPSASSRSEPVGLGGGLQPKRRSRTAKPPGSSSDTGEVVNSSRISNSQ NAVSMGQQVLQALASQNTNVNRSHVTDSPLPSTTSQFSGGMPPRRQGGEGQVDFGSMISSVLNNPAFGNLLSNVAEQTGMGSAGDLRNMVEECAQSPAIM DTMSNLVQNVDGSGRGQGGIDLSRMMQQMMPVVSQVLGGAGARPAGTNSGQSRLQPRRSDMRVDDASDYGNSQIDLHQAREHIEQHDSPRDIFGAVLETA AQAYGEDESIEDMLEELVSDPELTDDYLKLLLQQVRQRIQSASQSGNQS |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | No | ||||