LOC_Os07g31450
| RGAP LOCUS ID | LOC_Os07g31450 |
| RAP-DB ID | Os07g0497100 |
| Function | CHR4/MI-2-LIKE, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 6 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 3.917 |
3) NUCPRED Prediction |
|
| localization | Nuclear |
| score | 0.98 |
4) Y-Loc Prediction |
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| localization | Nuclear |
| score | 99.99 |
| confidence value | 0.78 |
| Number Of Software Predicting Nucleus | 4 |
| Seed Specific | No |
| Transcription factor category | PHD |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | CHR729|OsCHD3|CRL6|RFS |
| Function assigned as per literature | Role in seedling development via the gibberellin pathway. |
| Subcellular localization as per literature | Nucleus |
| Cells used for localization experiment | Rice protoplast cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 26398683 |
| Reference of localization | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0138934 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 6 |
| Number of PAT7 | 6 |
| Number of Bipartite | 3 |
| Basic residues % | 0.128 |
| NLS score | 4.78 |
| Protein Sequence | >LOC_Os07g31450.1 protein MKHLNDVRVGSKVARMYLVQANCVGGYKGRYFYECVECDLGGNLLCCDSCPRTYHLECLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTR RMRTSTTSDSPSPSPQNKASFNTSRGAAFRDDEPGAKDNEVEKRKPLILHLKKRSTKELSTDTTSSKSGLLGKSSEEKQEKHGSALKVKKHLHPMELSPK KYKNKKQHNHRDSKRSEAKKVQYLASDVDSDSSMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHITEKEHGGAGDKITTQGD LQVDRILGCRLQTSQIISPAHASSEQIDMAPPSASGAPEPSQALLKGLHEEIQSSNSDTNVTEDACADELANDGGENNLDCSDAQKESNVRSHGHKESLN AKEIMNTASACSADQIVTVKDAGAVQTYVTASVNGEYETVTDIPEEKNDTKHPVSKADTEVHTKQEHTPDSKLHGKIQETELKEHDGTTYEFLVKWVGKS NIHNSWISESELKALAKRKLENYKAKYGTDEIEEALIKWCALPYDECTWERLDEPTMVKYAHLVTQFKKFESQALDKDKGGSHAKPREHQEFNMLVEQPK ELQGGMLFPHQLEALNWLRKCWYKSKNVILADEMGLGKTVSACAFLSSLCCEYKINLPCLVLVPLSTMPNWMAEFASWAPHLNVVEYHGSARARSIIRQY EWHEGDASQMGKIKKSHKFNVLLTTYEMVLVDAAYLRSVSWEVLIVDEGHRLKNSSSKLFSLLNTLSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPS LASFEEKFNDLTTTEKVEELKNLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLI PGTEPESGSPEFLHEMRIKASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVAERQAAIARFNQDKSRFVFLLSTR SCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKSESQKEVEDIIRWGTEELFRNSDVAV KDNNEASGAKNDVAEVEFKHKRKTGGLGDVYEDRCADGSAKFIWDENAITKLLDRSNVPSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGATEDIPNI DNDGCEQASEAKQDAANRVEENEWDKLLRVRWEQYQTEEEASLGRGKRLRKAVSYRETFATIPNEALSEDSDEEDEPKREYTAAGLALKEKYEKLRARQK ERIAQRHVIKNYADDRLEEFMKLYDSSANPLRIVEDPNPVQPSGAKRLGESTAEMKQSSKKTKRYPEIPQELYAKLTGNAASSKHHPKAADISNSGTPHH LLPVLGLCAPNADQMNSYKGSVCGPSTKEQKRASGELANKPLLTPAVDHSSEQKHDGQPTPCKPMFPGSSEETLRRLNNIIPDSYFPFQPIPPISGKGIG DHVENPVSSIPSFQGKLGLPNFSLEDSIPLKHLKSVPDLFPNLSLGTSNEYLRNCVPELPNSSFLPSFMADIAGTSKQKNKFMADMSGLLPGLAINPVQQ IHSSMPENHKKVLDKLMMRAQYSSSKFLKNASNKFLKKSLKPDYWSEDELDALWIGVRRHGRGNWEAMLRDPKLKFLSHRSHEELASRWILEEQKIIEEP MPTATRSSNSTSFPGISDAMMSRALNGSSFSKLRMEPPKLQSHLTDIQLGCNDIPTRFSHVEPTNYMNLSEGGPSLTPWQDFKNRSGHSGDFPGPLDKWE KPDMGLIPPFMPNPFMKESIGSLPINRHSSNSIQQNEVGSSSHESILHGFSDGQAKLFHEMQRRVKLGKLPIEMNLNHTKLSDPLAENSGDFESSKPNKL PHWLQEAVRAPPSKPPECELPATVSAIAQSVCLLLGEQKPAIPPFPIPGPRLSLPKDPRSAPKKRRVHKVQQASSLVDHSKTTVGQGDHNSTPSAPLSME AAPASPAVIKSSDTPSLNLNSPSSSSAGSRGQDASTPSTFEEPERTMEVSEPASVAAATCPSRPEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQ KSELSGSGNTPTELSVLPLVDAPGTSSEPAVVPVSSDEESTQEGVPGKAVSTGDQEKRTPPDESENSGAANPVSAAQTADEDKVDEMITDEH |
GO Analysis |
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| Presence of Splice variants | No |