LOC_Os07g30774

Expression Profile

RGAP LOCUS ID LOC_Os07g30774
RAP-DB ID Os07g0490200
Function calmodulin-binding transcription activator 5, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 1.628

3) NUCPRED Prediction
localization Non Nuclear
score 0.77

4) Y-Loc Prediction
localization Cytoplasm
score 49
confidence value 0.18
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category CAMTA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCBT
Function assigned as per literature OsCBT is a transcription activator modulated by CaM. OsCBT suppresses defense responses to pathogens in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 16192280
Reference of localization http://www.jbc.org/content/280/49/40820.long#F5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.118
NLS score 0.96
Protein Sequence >LOC_Os07g30774.1 protein
MAGAGGWDPLVGSEIHGFLTYPDLNYEKLVAEAAARWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHE
KLKIGNEERVHVYYARGEDDPNFFRRCYWLLDKDLERIVLVHYRQTAEENAMAPPNPEPEVADVPTVNLIHYTSPLTSADSTSGHTELSLPEEINSHGGI
SASSETGNHDSSLEEFWANLLESSIKNDPKVVTSACGGSFVSSQQINNGPKNSGNIVNTSMASNAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQT
QSLLASDVDSQSDQFISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVTNERLLEINEISPEWAYSTETTKVVVIGNFYE
QYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMVGPHTPGKVDFYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFATNK
KKIAPKLLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLVEMVMEGHKSTGRDDLGQGAIHLCSFLGYTWAIRLFSLSG
FSLDFRDSSGWTALHWAAYHGRERMVATLLSAGANPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQSPSKTRLTKLQS
EKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEIEASEIVAAMKIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMR
RQVIRIQAAYRGHQVRRQYRKVIWSVGIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDRFNRSVVRVQALFRSYKAQQ
EYRRMKIAHEEAKIEFSEGQLGAACRS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No