LOC_Os07g30240

Expression Profile

RGAP LOCUS ID LOC_Os07g30240
RAP-DB ID Os07g0486000
Function mutS family domain IV containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Nuclear
score 1.521

3) NUCPRED Prediction
localization Non Nuclear
score 0.4

4) Y-Loc Prediction
localization Nuclear
score 53.31
confidence value 0.18
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMSH4
Function assigned as per literature OsMSH4/5 heterodimer plays a key role in regulation of crossover formation during rice meiosis by interaction with the RPA complex
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana
NUCLEAR or Not Nuclear NUCLEAR
PMID 26712826
Reference of localization https://academic.oup.com/jxb/search-results?page=1&q=The%20role%20of%20OsMSH4%20in%20male%20and%20female%20gamete%20development%20in%20rice%20meiosis&fl_SiteID=5304&allJournals=1&SearchSourceType=1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.22
Protein Sequence >LOC_Os07g30240.1 protein
MEGDAAGAGGGDRSSIVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSCSYHNTKTLLHFYDPMVAIVPPNKTAADGMVGVSELVGKHLPTNKKGAVMV
KNLSARDPSALGLDTYCKQYYLCLAAASATIKWIESERGVIITNHSLSVTFNGSFDHMNIDSTRTRLLRANLLQPLKDIQTINTRLDCLDELMSNEELFF
GLTQGLRKFPKESDKVLCHFCFKPKKDTDEVLKPANGRKSQGLISDIIVLKTALDAIPFLSKVLRGAKSFLLRNIYQTICENPKYASMRKRIGDVIDEDV
VHSRAPFVTCTQQCFAIKAGIDGLLDVARRSFCDTSEAIHNLANKYREDFKLPNLKIPYNNRLGFYFIVPQKDITERLPNKFIQVVRHGKNVHCSSLELA
SPNNLFLSEASNMVLVMGPNMSGKSTYLQQICLIVILAQIGCYVPAQFASLRVVDRVFTRIGTGDNVENNSSTFMTEMKETAFIMQNVSSKSLIVVDELG
RATSSSDGLAIAWSCCEYLLSTKAYTVFATHMESLSELATIYPNVKILHFEVDLRNDRLDFKFRLKDGVRKVPHYGLLLAKVAGLPSSVIDTAASITSRI
TEQEMVRKDDNCEQYRSLQMAYQVTQRLICLKQSNQGDDYIREALQNLKDGYAAGRLT

GO Analysis
1
GO Category Molecular Function
GO Term nucleotide binding
2
GO Category Cellular comBiological Processonent
GO Term intracellular
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Biological Process
GO Term cell cycle
6
GO Category Biological Process
GO Term cellular component organization
7
GO Category Cellular comBiological Processonent
GO Term cellular_component
8
GO Category Molecular Function
GO Term DNA binding
9
GO Category Cellular comBiological Processonent
GO Term nucleus
10
GO Category Biological Process
GO Term catabolic process
11
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
12
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No