LOC_Os07g22600

Expression Profile

RGAP LOCUS ID LOC_Os07g22600
RAP-DB ID Os07g0408700
Function spermidine synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 6

2) CELLO Prediction
localization Cytoplasmic
score 3.321

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 84
confidence value 0.76
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPDS1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.087
NLS score -0.47
Protein Sequence >LOC_Os07g22600.1 protein
MEAEAAAKRARESGDAAAAGAGEQAGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHL
PLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPHLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIGPAQELF
EKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFQHPIFNIEDNEFSTKSKGPLKFYN
SEIHSASFCLPSFAKRVIGSKAN

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Molecular Function
GO Term transferase activity
Presence of Splice variants YES